OpenBU

Characterization of Housekeeping Genes in Zebrafish: Male-Female Differences and Effects of Tissue Type, Developmental Stage and Chemical Treatment

OpenBU

Show simple item record

dc.contributor.author McCurley, Amy T en_US
dc.contributor.author Callard, Gloria V en_US
dc.date.accessioned 2011-12-29T23:24:06Z
dc.date.available 2011-12-29T23:24:06Z
dc.date.copyright 2008 en_US
dc.date.issued 2008-11-12 en_US
dc.identifier.citation McCurley, Amy T, Gloria V Callard. "Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment" BMC Molecular Biology 9:102. (2008) en_US
dc.identifier.issn 1471-2199 en_US
dc.identifier.uri http://hdl.handle.net/2144/2639
dc.description.abstract BACKGROUND: Research using the zebrafish model has experienced a rapid growth in recent years. Although real-time reverse transcription PCR (QPCR), normalized to an internal reference ("housekeeping") gene, is a frequently used method for quantifying gene expression changes in zebrafish, many commonly used housekeeping genes are known to vary with experimental conditions. To identify housekeeping genes that are stably expressed under different experimental conditions, and thus suitable as normalizers for QPCR in zebrafish, the present study evaluated the expression of eight commonly used housekeeping genes as a function of stage and hormone/toxicant exposure during development, and by tissue type and sex in adult fish. RESULTS: QPCR analysis was used to quantify mRNA levels of bactin1, tubulin alpha 1(tuba1), glyceraldehyde-3-phosphate dehydrogenase (gapdh), glucose-6-phosphate dehydrogenase (g6pd), TATA-box binding protein (tbp), beta-2-microglobulin (b2m), elongation factor 1 alpha (elfa), and 18s ribosomal RNA (18s) during development (2 – 120 hr postfertilization, hpf); in different tissue types (brain, eye, liver, heart, muscle, gonads) of adult males and females; and after treatment of embryos/larvae (24 – 96 hpf) with commonly used vehicles for administration and agents that represent known environmental endocrine disruptors. All genes were found to have some degree of variability under the conditions tested here. Rank ordering of expression stability using geNorm analysis identified 18s, b2m, and elfa as most stable during development and across tissue types, while gapdh, tuba1, and tpb were the most variable. Following chemical treatment, tuba1, bactin1, and elfa were the most stably expressed whereas tbp, 18s, and b2m were the least stable. Data also revealed sex differences that are gene- and tissue-specific, and treatment effects that are gene-, vehicle- and ligand-specific. When the accuracy of QPCR analysis was tested using different reference genes to measure suppression of cyp19a1b by an estrogen receptor antagonist and induction of cyp1a by an arylhydrocarbon receptor agonist, the direction and magnitude of effects with stable and unstable genes differed. CONCLUSION: This study provides data that can be expected to aid zebrafish researchers in their initial choice of housekeeping genes for future studies, but underlines the importance of further validating housekeeping genes for each new experimental paradigm and fish species. en_US
dc.description.sponsorship National Institutes of Health (NIEHS P42ES07381; NICHD 2T 32HD073897); US Environmental Protection Agency (STAR RD831301) en_US
dc.language.iso en en_US
dc.publisher BioMed Central en_US
dc.rights Copyright 2008 McCurley and Callard; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution 2.0 License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. en_US
dc.rights.uri http://creativecommons.org/licenses/by/2.0 en_US
dc.title Characterization of Housekeeping Genes in Zebrafish: Male-Female Differences and Effects of Tissue Type, Developmental Stage and Chemical Treatment en_US
dc.type article en_US
dc.identifier.doi 10.1186/1471-2199-9-102 en_US
dc.identifier.pubmedid 19014500 en_US
dc.identifier.pmcid 2588455 en_US


Files in this item

This item appears in the following Collection(s)

Show simple item record

Copyright 2008 McCurley and Callard; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution 2.0 License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Except where otherwise noted, this item's license is described as Copyright 2008 McCurley and Callard; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution 2.0 License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Search OpenBU


Browse

Deposit Materials

Statistics