SPH Biostatistics Digital Archive http://hdl.handle.net/2144/1286 2013-05-23T22:57:24Z 2013-05-23T22:57:24Z PleioGRiP: Pleiotropic Genetic Risk Prediction via Bayesian model search and classification Sebastiani, Paola Hartley, Stephen http://hdl.handle.net/2144/4367 2013-01-09T20:13:01Z 2012-11-16T00:00:00Z PleioGRiP: Pleiotropic Genetic Risk Prediction via Bayesian model search and classification Sebastiani, Paola; Hartley, Stephen The program PleioGRiP performs a genome-wide Bayesian model search to identify SNPs associated with a discrete phenotype, and uses SNPs ranked by Bayes factor to produce nested Bayesian classifiers. These classifiers can be used for genetic risk prediction, either selecting the classifier with optimal number of features, or using an ensemble of classifiers. In addition, PleioGRiP implements an extension to the Bayesian search and classification, and can search for pleiotropic relationships in which SNPs are simultaneously associated with two or more distinct phenotypes. These relationships can be used to generate connected Bayesian classifiers to predict the phenotype of interest either using genetic data alone, or in combination with the secondary phenotype(s). 2012-11-16T00:00:00Z CAGED (Cluster Analysis of Gene Expression Dynamics) Sebastiani, Paola http://hdl.handle.net/2144/1290 2012-09-20T18:46:47Z 2010-01-27T20:28:22Z CAGED (Cluster Analysis of Gene Expression Dynamics) Sebastiani, Paola Computer program for the analysis of temporal expression profiles of gene expression data You will need a password to use this program. Please email sebas@bu.edu for a password. 2010-01-27T20:28:22Z BADGE (Bayesian Analysis of Differential Gene Expression) Sebastiani, Paola http://hdl.handle.net/2144/1289 2012-09-20T18:45:19Z 2010-01-27T20:26:13Z BADGE (Bayesian Analysis of Differential Gene Expression) Sebastiani, Paola A program for analysis of differential gene expression data using Bayesian model averaging. You will need a password to use this program. Please email sebas@bu.edu for the password. 2010-01-27T20:26:13Z Bayesware Discoverer Sebastiani, Paola http://hdl.handle.net/2144/1288 2012-09-20T18:55:03Z 2010-01-27T20:21:30Z Bayesware Discoverer Sebastiani, Paola A program for learning Bayesian networks from data and reasoning using probabilistic inference. You will need a password to use this software. To get a password, please email sebas@bu.edu. 2010-01-27T20:21:30Z