<?xml version="1.0" encoding="UTF-8"?>
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<title>Center for Biodynamics</title>
<link href="http://hdl.handle.net/2144/2709" rel="alternate"/>
<subtitle/>
<id>http://hdl.handle.net/2144/2709</id>
<updated>2013-05-24T14:39:05Z</updated>
<dc:date>2013-05-24T14:39:05Z</dc:date>
<entry>
<title>The Mechanism of Abrupt Transition between Theta and Hyper-Excitable Spiking Activity in Medial Entorhinal Cortex Layer II Stellate Cells</title>
<link href="http://hdl.handle.net/2144/3449" rel="alternate"/>
<author>
<name>Kispersky, Tilman</name>
</author>
<author>
<name>White, John A.</name>
</author>
<author>
<name>Rotstein, Horacio G.</name>
</author>
<id>http://hdl.handle.net/2144/3449</id>
<updated>2012-01-13T07:00:42Z</updated>
<published>2010-11-04T00:00:00Z</published>
<summary type="text">The Mechanism of Abrupt Transition between Theta and Hyper-Excitable Spiking Activity in Medial Entorhinal Cortex Layer II Stellate Cells
Kispersky, Tilman; White, John A.; Rotstein, Horacio G.
Recent studies have shown that stellate cells (SCs) of the medial entorhinal cortex become hyper-excitable in animal models of temporal lobe epilepsy. These studies have also demonstrated the existence of recurrent connections among SCs, reduced levels of recurrent inhibition in epileptic networks as compared to control ones, and comparable levels of recurrent excitation among SCs in both network types. In this work, we investigate the biophysical and dynamic mechanism of generation of the fast time scale corresponding to hyper-excitable firing and the transition between theta and fast firing frequency activity in SCs. We show that recurrently connected minimal networks of SCs exhibit abrupt, threshold-like transition between theta and hyper-excitable firing frequencies as the result of small changes in the maximal synaptic (AMPAergic) conductance. The threshold required for this transition is modulated by synaptic inhibition. Similar abrupt transition between firing frequency regimes can be observed in single, self-coupled SCs, which represent a network of recurrently coupled neurons synchronized in phase, but not in synaptically isolated SCs as the result of changes in the levels of the tonic drive. Using dynamical systems tools (phase-space analysis), we explain the dynamic mechanism underlying the genesis of the fast time scale and the abrupt transition between firing frequency regimes, their dependence on the intrinsic SC's currents and synaptic excitation. This abrupt transition is mechanistically different from others observed in similar networks with different cell types. Most notably, there is no bistability involved. 'In vitro' experiments using single SCs self-coupled with dynamic clamp show the abrupt transition between firing frequency regimes, and demonstrate that our theoretical predictions are not an artifact of the model. In addition, these experiments show that high-frequency firing is burst-like with a duration modulated by an M-current.
</summary>
<dc:date>2010-11-04T00:00:00Z</dc:date>
</entry>
<entry>
<title>Representation of Time-Varying Stimuli by a Network Exhibiting Oscillations on a Faster Time Scale</title>
<link href="http://hdl.handle.net/2144/3448" rel="alternate"/>
<author>
<name>Shamir, Maoz</name>
</author>
<author>
<name>Ghitza, Oded</name>
</author>
<author>
<name>Epstein, Steven</name>
</author>
<author>
<name>Kopell, Nancy</name>
</author>
<id>http://hdl.handle.net/2144/3448</id>
<updated>2012-01-13T07:00:58Z</updated>
<published>2009-05-01T00:00:00Z</published>
<summary type="text">Representation of Time-Varying Stimuli by a Network Exhibiting Oscillations on a Faster Time Scale
Shamir, Maoz; Ghitza, Oded; Epstein, Steven; Kopell, Nancy
Sensory processing is associated with gamma frequency oscillations (30–80 Hz) in sensory cortices. This raises the question whether gamma oscillations can be directly involved in the representation of time-varying stimuli, including stimuli whose time scale is longer than a gamma cycle. We are interested in the ability of the system to reliably distinguish different stimuli while being robust to stimulus variations such as uniform time-warp. We address this issue with a dynamical model of spiking neurons and study the response to an asymmetric sawtooth input current over a range of shape parameters. These parameters describe how fast the input current rises and falls in time. Our network consists of inhibitory and excitatory populations that are sufficient for generating oscillations in the gamma range. The oscillations period is about one-third of the stimulus duration. Embedded in this network is a subpopulation of excitatory cells that respond to the sawtooth stimulus and a subpopulation of cells that respond to an onset cue. The intrinsic gamma oscillations generate a temporally sparse code for the external stimuli. In this code, an excitatory cell may fire a single spike during a gamma cycle, depending on its tuning properties and on the temporal structure of the specific input; the identity of the stimulus is coded by the list of excitatory cells that fire during each cycle. We quantify the properties of this representation in a series of simulations and show that the sparseness of the code makes it robust to uniform warping of the time scale. We find that resetting of the oscillation phase at stimulus onset is important for a reliable representation of the stimulus and that there is a tradeoff between the resolution of the neural representation of the stimulus and robustness to time-warp. 

Author Summary

Sensory processing of time-varying stimuli, such as speech, is associated with high-frequency oscillatory cortical activity, the functional significance of which is still unknown. One possibility is that the oscillations are part of a stimulus-encoding mechanism. Here, we investigate a computational model of such a mechanism, a spiking neuronal network whose intrinsic oscillations interact with external input (waveforms simulating short speech segments in a single acoustic frequency band) to encode stimuli that extend over a time interval longer than the oscillation's period. The network implements a temporally sparse encoding, whose robustness to time warping and neuronal noise we quantify. To our knowledge, this study is the first to demonstrate that a biophysically plausible model of oscillations occurring in the processing of auditory input may generate a representation of signals that span multiple oscillation cycles.
</summary>
<dc:date>2009-05-01T00:00:00Z</dc:date>
</entry>
<entry>
<title>Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex</title>
<link href="http://hdl.handle.net/2144/3150" rel="alternate"/>
<author>
<name>Kramer, Mark A.</name>
</author>
<author>
<name>Roopun, Anita K.</name>
</author>
<author>
<name>Carracedo, Lucy M.</name>
</author>
<author>
<name>Traub, Roger D.</name>
</author>
<author>
<name>Whittington, Miles A.</name>
</author>
<author>
<name>Kopell, Nancy J.</name>
</author>
<id>http://hdl.handle.net/2144/3150</id>
<updated>2012-01-12T07:00:33Z</updated>
<published>2008-09-05T00:00:00Z</published>
<summary type="text">Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex
Kramer, Mark A.; Roopun, Anita K.; Carracedo, Lucy M.; Traub, Roger D.; Whittington, Miles A.; Kopell, Nancy J.
Rhythmic voltage oscillations resulting from the summed activity of neuronal populations occur in many nervous systems. Contemporary observations suggest that coexistent oscillations interact and, in time, may switch in dominance. We recently reported an example of these interactions recorded from in vitro preparations of rat somatosensory cortex. We found that following an initial interval of coexistent gamma (∼25 ms period) and beta2 (∼40 ms period) rhythms in the superficial and deep cortical layers, respectively, a transition to a synchronous beta1 (∼65 ms period) rhythm in all cortical layers occurred. We proposed that the switch to beta1 activity resulted from the novel mechanism of period concatenation of the faster rhythms: gamma period (25 ms)+beta2 period (40 ms) = beta1 period (65 ms). In this article, we investigate in greater detail the fundamental mechanisms of the beta1 rhythm. To do so we describe additional in vitro experiments that constrain a biologically realistic, yet simplified, computational model of the activity. We use the model to suggest that the dynamic building blocks (or motifs) of the gamma and beta2 rhythms combine to produce a beta1 oscillation that exhibits cross-frequency interactions. Through the combined approach of in vitro experiments and mathematical modeling we isolate the specific components that promote or destroy each rhythm. We propose that mechanisms vital to establishing the beta1 oscillation include strengthened connections between a population of deep layer intrinsically bursting cells and a transition from antidromic to orthodromic spike generation in these cells. We conclude that neural activity in the superficial and deep cortical layers may temporally combine to generate a slower oscillation. Author SummarySince the late 19th century, rhythmic electrical activity has been observed in the mammalian brain. Although subject to intense scrutiny, only a handful of these rhythms are understood in terms of the biophysical elements that produce the oscillations. Even less understood are the mechanisms that underlie interactions between rhythms; how do rhythms of different frequencies coexist and affect one another in the dynamic environment of the brain? In this article, we consider a recent proposal for a novel mechanism of cortical rhythm generation: period concatenation, in which the periods of faster rhythms sum to produce a slower oscillation. To model this phenomenon, we implement simple—yet biophysical—computational models of the individual neurons that produce the brain's voltage activity. We utilize established models for the faster rhythms, and unite these in a particular way to generate a slower oscillation. Through the combined approach of experimental recordings (from thin sections of rat cortex) and mathematical modeling, we identify the cell types, synaptic connections, and ionic currents involved in rhythm generation through period concatenation. In this way the brain may generate new activity through the combination of preexisting elements.
</summary>
<dc:date>2008-09-05T00:00:00Z</dc:date>
</entry>
<entry>
<title>Size Matters: Network Inference Tackles the Genome Scale</title>
<link href="http://hdl.handle.net/2144/3065" rel="alternate"/>
<author>
<name>Hayete, Boris</name>
</author>
<author>
<name>Gardner, Timothy S</name>
</author>
<author>
<name>Collins, James J</name>
</author>
<id>http://hdl.handle.net/2144/3065</id>
<updated>2012-01-11T07:00:43Z</updated>
<published>2007-02-13T00:00:00Z</published>
<summary type="text">Size Matters: Network Inference Tackles the Genome Scale
Hayete, Boris; Gardner, Timothy S; Collins, James J
</summary>
<dc:date>2007-02-13T00:00:00Z</dc:date>
</entry>
</feed>
