Browsing CAS: Computer Science: Scholarly Papers by Title

OpenBU

Browsing CAS: Computer Science: Scholarly Papers by Title

Sort by: Order: Results:

  • 3'-UTR SIRF: A Database for Identifying Clusters of Whort Interspersed Repeats in 3' Untranslated Regions
    Andken, Benjamin B; Lim, In; Benson, Gary; Vincent, John J; Ferenc, Matthew T; Heinrich, Bianca; Jarzylo, Larissa A; Man, Heng-Ye; Deshler, James O (BioMed Central, 2007-7-30)
    BACKGROUND. Short (~5 nucleotides) interspersed repeats regulate several aspects of post-transcriptional gene expression. Previously we developed an algorithm (REPFIND) that assigns P-values to all repeated motifs in a ...
  • Biological Context Networks: A Mosaic View of the Interactome
    Rachlin, John; Cohen, Dikla Dotan; Cantor, Charles; Kasif, Simon (2006-11-28)
    Network models are a fundamental tool for the visualization and analysis of molecular interactions occurring in biological systems. While broadly illuminating the molecular machinery of the cell, graphical representations ...
  • Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation
    Giordano, Joti; Ge, Yongchao; Gelfand, Yevgeniy; Abrusán, György; Benson, Gary; Warburton, Peter E (Public Library of Science, 2007-7-13)
    The constant bombardment of mammalian genomes by transposable elements (TEs) has resulted in TEs comprising at least 45% of the human genome. Because of their great age and abundance, TEs are important in comparative ...
  • Finding Local Communities in Protein Networks
    Voevodski, Konstantin; Teng, Shang-Hua; Xia, Yu (BioMed Central, 2009-9-18)
    BACKGROUND. Protein-protein interactions (PPIs) play fundamental roles in nearly all biological processes, and provide major insights into the inner workings of cells. A vast amount of PPI data for various organisms is ...
  • Spectral affinity in protein networks
    Voevodski, Konstantin; Teng, Shang-Hua; Xia, Yu (BioMed Central, 2009-11-29)
    BACKGROUND. Protein-protein interaction (PPI) networks enable us to better understand the functional organization of the proteome. We can learn a lot about a particular protein by querying its neighborhood in a PPI network ...
  • TRDB—The Tandem Repeats Database
    Gelfand, Yevgeniy; Rodriguez, Alfredo; Benson, Gary (Oxford University Press, 2006-12-14)
    Tandem repeats in DNA have been under intensive study for many years, first, as a consequence of their usefulness as genomic markers and DNA fingerprints and more recently as their role in human disease and regulatory ...

Search OpenBU


Advanced Search

Browse

Deposit Materials