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Browsing College of Engineering by Author "Gardner, Timothy S"

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Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles

Faith, Jeremiah J; Hayete, Boris; Thaden, Joshua T; Mogno, Ilaria; Wierzbowski, Jamey; Cottarel, Guillaume; Kasif, Simon; Collins, James J; Gardner, Timothy S (Public Library of Science, 2007-1-9)

Machine learning approaches offer the potential to systematically identify transcriptional regulatory interactions from a compendium of microarray expression profiles. However, experimental validation of the performance ...
Lightweight Genome Viewer: Portable Software for Browsing Genomics Data in its Chromosomal Context

Faith, Jeremiah J; Olson, Andrew J; Gardner, Timothy S; Sachidanandam, Ravi (BioMed Central, 2007-9-18)

BACKGROUND. Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of larger genome browsers, while relying on standard ...
On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference

Cosgrove, Elissa J; Gardner, Timothy S; Kolaczyk, Eric D (BioMed Central, 2010-9-9)

BACKGROUND. Transcriptional regulatory network inference (TRNI) from large compendia of DNA microarrays has become a fundamental approach for discovering transcription factor (TF)-gene interactions at the genome-wide level. ...
Size Matters: Network Inference Tackles the Genome Scale

Hayete, Boris; Gardner, Timothy S; Collins, James J (2007-02-13)

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Browsing College of Engineering by Author "Gardner, Timothy S"

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