• Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes 

  Vajda, Sandor; Vakili, Pirooz; Paschalidis, Ioannis Ch.; Shen, Yang (2008-10)

  Similarly to protein folding, the association of two proteins is driven by a free energy funnel, determined by favorable interactions in some neighborhood of the native state. We describe a docking method based on stochastic ...
• Mapping the landscape of metabolic goals of a cell 

  Segrè, Daniel; Paschalidis, Ioannis Ch.; Zhao, Qi; Stettner, Arion I.; Reznik, Ed (BioMed Central, 2016-05)

  Genome-scale flux balance models of metabolism provide testable predictions of all metabolic rates in an organism, by assuming that the cell is optimizing a metabolic goal known as the objective function. We introduce an ...
• Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations 

  Chowdhury, Rezaul; Beglov, Dmitri; Moghadasi, Mohammad; Vakili, Pirooz; Vajda, Sandor; Bajaj, Chandrajit; Kozakov, Dima; Paschalidis, Ioannis Ch. (2014-10)

  Molecular mechanics and dynamics simulations use distance based cutoff approximations for faster computation of pairwise van der Waals and electrostatic energy terms. These approximations traditionally use a precalculated ...
• Encounter Complexes and Dimensionality Reduction in Protein-Protein Association 

  Vajda, S.; Clore, G. M.; Paschalidis, Ioannis Ch.; Schueler-Furman, O.; Vakili, P.; Zheng, J.; Beglov, D.; Hall, D.; Li, K.; Kozakov, D. (2014)

  An outstanding challenge has been to understand the mechanism whereby proteins associate. We report here the results of exhaustively sampling the conformational space in protein–protein association using a physics-based ...
• Temporal Logic Motion Control using Actor-Critic Methods 

  Ding, X. C.; Wang, J.; Lahijanian, M.; Paschalidis, Ioannis Ch.; Belta, C. (2012)

  In this paper, we consider the problem of deploying a robot from a specification given as a temporal logic statement about some properties satisfied by the regions of a large, partitioned environment. We assume that the ...
• Network Anomaly Detection: A Survey and Comparative Analysis of Stochastic and Deterministic Methods 

  Wang, J.; Rossell, D.; Cassandras, C. G.; Paschalidis, Ioannis Ch. (2013-12)

  We present five methods to the problem of network anomaly detection. These methods cover most of the common techniques in the anomaly detection field, including Statistical Hypothesis Tests (SHT), Support Vector Machines ...
• Research in Progress: July 1984 v. 5, no. 1 

  Boston University School of Medicine (Boston University School of Medicine, 1984-07)
• Research in Progress: December 1984 v. 5, no. 2 

  Boston University School of Medicine (Boston University School of Medicine, 1984-12)
• Research in Progress: June 1985 v. 6, no. 1 

  Boston University School of Medicine (Boston University School of Medicine, 1985-06)
• Research in Progress: December 1985 v. 6, no. 2 

  Boston University School of Medicine (Boston University School of Medicine, 1985-12)
• Research in Progress: Winter 1986-87 v. 7, no. 3 

  Boston University School of Medicine (Boston University School of Medicine, 1986)
• Research in Progress: Spring 1986 v. 7, no. 1 

  Boston University School of Medicine (Boston University School of Medicine, 1986)
• Research in Progress: Summer 1986 v. 7, no. 2 

  Boston University School of Medicine (Boston University School of Medicine, 1986)
• Research in Progress: Summer 1987 v. 8, no. 1 

  Boston University School of Medicine (Boston University School of Medicine, 1987)
• Determinación del Desbalance en Sistemas Rotor-cojinete a velocidad constante: Método de Identificación Algebraica 

  Gutierrez-Wing, Enrique; Mendoza Larios, J. G.; Blanco Ortega, A.; Colin Ocampo, J. (Sociedad Mexicana de Ingenieria Mecanica, 2016-03-02)

  The development of a mathematical model for an on-line algebraic identifier is presented in this work. This model is used for determining the unbalance and its related angular position on vibrating rotor-dynamic systems ...
• 

  The phenomenology of Edmund Husserl. 

  Wellbank, Joseph H. (Boston University, 1959)

  The purpose of this thesis is to present an exposition and evaluation of the phenomenology of Edmund Husserl. The goal of Husserl's phenomenology is to describe apodeictically the unchangeable aspect of factual experience ...
• 

  A survey of literature on gifted child programs and suggested activities for the gifted 

  Turmelle, Wilfred Joseph; Zwonik, Chester (Boston University, 1959)
• 

  Maintaining quality of McIntosh apples from orchard to consumer. 

  Simonds, Jonathan Otis (Boston University, 1956)
• 

  The organization of the Church, musically. 

  Townsend, William Burless (Boston University, 1952)

  Church music has held a very important position in the service of worship ever since the very earliest days of the Christian Church. And, for this reason, music owes much to the church because it actually grew up inside ...
• 

  A study of the directors of women's residence halls in universities and colleges. 

  Yorita, Peggy Hiroko (Boston University, 1959)

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